Introduction
To create an as-amended version of a Bill you can do either of the following (or a combination of both):
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See Auto-application of amendments to a bill Bill version for more detail.
Accepting auto-applied amendments
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An 'as amended' version of the bill can be constructed from both automatically and manually applied amendments and you can make 'silent' printing changes as required around these applied amendments as you currently do.
See Accepting all applied amendments in a bill version.
Manually applying amendments
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If a cross reference didn't update as expected, check that the target provision exists in the document where the amendment content was pasted and try running Update x-refs again - see To update/refresh cross https://lawmaker.atlassian.net/wiki/spaces/USERMANUAL/pages/688776/Cross-references+x-refs#Updating-existing-cross-references